rliger - Linked Inference of Genomic Experimental Relationships
Uses an extension of nonnegative matrix factorization to identify shared and dataset-specific factors. See Welch J, Kozareva V, et al (2019) <doi:10.1016/j.cell.2019.05.006>, and Liu J, Gao C, Sodicoff J, et al (2020) <doi:10.1038/s41596-020-0391-8> for more details.
Last updated 3 months ago
nonnegative-matrix-factorizationsingle-cellopenblascpp
10.77 score 408 stars 1 dependents 334 scripts 1.3k downloads
CytoSimplex - Simplex Visualization of Cell Fate Similarity in Single-Cell Data
Create simplex plots to visualize the similarity between single-cells and selected clusters in a 1-/2-/3-simplex space. Velocity information can be added as an additional layer. See Liu J, Wang Y et al (2023) <doi:10.1101/2023.12.07.570655> for more details.
Last updated 1 days ago
openblascpp
4.78 score 4 stars 3 scripts 183 downloads